1. Jha PK, Valekunja UK#, Reddy AB. SlumberNet: deep learning classification of sleep stages using residual neural networks. Sci Rep 14, 4797 (2024). https://doi.org/10.1038/s41598-024-54727-0. (# Equal contribution)
2. Beale AD, Hayter EA, Crosby P, Valekunja UK, Edgar RS, Chesham JE, Maywood ES, Labeed FH, Reddy AB, Wright KP Jr, Lilley KS, Bechtold DA, Hastings MH, O’Neill JS. Mechanisms and physiological function of daily haemoglobin oxidation rhythms in red blood cells. EMBO J. 2023 Aug 9:e114164. doi: 10.15252/embj.2023114164. PMID: 37554073
3. Naik A, Forrest KM, Paul O, Issah Y, Valekunja UK, Tang SY, Reddy AB, Hennessy EJ, Brooks TG, Chaudhry FN, Babu A, Morley MP, Zepp JA, Grant GR, FitzGerald G, Sehgal A, Worthen GS, Frank DB, Morrisey EE, Sengupta S. Circadian regulation of lung repair and regeneration. JCI Insight. 2023 Jul 18:e164720. doi: 10.1172/jci.insight.164720. PMID: 37463053.
4. Jha PK#, Valekunja UK#, Ray S, Nollet M, Reddy AB. Single-cell transcriptomics and cell-specific proteomics reveals molecular signatures of sleep. Commun Biol. 2022 Aug 19;5(1):846. doi: 10.1038/s42003-022-03800-3. PMID: 35986171. (# Equal contribution)
5. Ray S#, Valekunja UK#, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB. Response to Comment on “Circadian rhythms in the absence of the clock gene Bmal1”. Science. 2020 Apr 16;367(6539). PMID: 33859000. DOI: 10.1126/science.abf1941. (# Equal contribution)
6. Ray S#, Valekunja UK#, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB. Response to Comment on “Circadian rhythms in the absence of the clock gene Bmal1”. Science. 2021 Apr 16;372(6539). PMID: 33859007. DOI: 10.1126/science.abf1930. (# Equal contribution)
7. Ch R, Rey G, Ray S, Jha PK, Driscoll PC, Silva Dos Santos M, Malik DM, Lach R, Weljie AM, MacRae JI, Valekunja UK, Reddy AB. Rhythmic glucose metabolism regulates the redox circadian clockwork in human red blood cells. Nat Commun. 12, 377 (2021). PMID: 33452240. https://doi.org/10.1038/s41467-020-20479-4
8. Ray S#, Valekunja UK#, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB. Circadian rhythms in the absence of the clock gene Bmal1. Science. 2020 Feb 14;367(6479):800-806. PMID: 32054765. doi: 10.1126/science.aaw7365. (# Equal contribution)
9. Ray S, Lach R, Heesom KJ, Valekunja UK, Encheva V, Snijders AP, Reddy AB. Phenotypic proteomic profiling identifies a landscape of targets for circadian clock-modulating compounds. Life Sci Alliance. 2019 Dec 2;2(6):e201900603. PMID: 31792063. doi:10.26508/lsa.201900603.
10. Rey G, Milev NB, Valekunja UK, Ch R, Ray S, Silva Dos Santos M, Nagy AD, Antrobus R, MacRae JI, Reddy AB. Metabolic oscillations on the circadian time scale in Drosophila cells lacking clock genes. Mol Syst Biol. 2018 Aug 2;14(8):e8376. doi:10.15252/msb.20188376.
11. Rey G, Valekunja UK, Feeney KA, Wulund L, Milev NB, Stangherlin A, Ansel-Bollepalli L, Velagapudi V, O’Neill JS, Reddy AB. The Pentose Phosphate Pathway Regulates the Circadian Clock. Cell Metab. 2016 Sep 13;24(3):462-473. doi: 10.1016/j.cmet.2016.07.024. Epub 2016 Aug 18. PMID: 27546460;
12. Milev NB, Rey G, Valekunja UK, Edgar RS, O’Neill JS, Reddy AB. Chapter Nine – Analysis of the Redox Oscillations in the Circadian Clockwork, Methods Enzymol. Academic Press, 2015, Volume 552, Pages 185-210, ISSN 0076-6879, ISBN 9780128033807, PMID: 25707278, doi:10.1016/bs.mie.2014.10.007.
13. Valekunja UK, Edgar RS, Oklejewicz M, van der Horst GT, O’Neill JS, Tamanini F, Turner DJ, Reddy AB. Histone methyltranserase MLL3 contributes to genome-scale circadian transcription. Proc Natl Acad Sci U S A. 2013 Jan 22 110(4):1554–1559. PMID:23297224.
14. Olmedo M, O’Neill JS, Edgar RS, Valekunja UK, Reddy AB, Merrow M. Circadian regulation of olfaction and an evolutionarily conserved, nontranscriptional marker in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20479-84. PMID: 23185015.
15. Edgar RS, Green EW, Zhao Y, Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, Johnson CH, Kyriacou CP, O’Neil JS, Reddy AB. Peroxiredoxins are conserved markers of circadian rhythms. Nature. 2012 May 16;485(7399):459-64. PMID: 22622569.
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